ABSTRACT

The Affymetrix GeneChip system is one of the most widely adapted microarray platforms. However, due to the overwhelming amount of information available, many Affymetrix users tend to stick to the default analysis settings and may end up drawing sub-optimal conclusions. Written by a molecular biologist and a biostatistician with a combined decade of

chapter 1|16 pages

Biological question

chapter 2|24 pages

Affymetrix microarrays

chapter 3|38 pages

Running the experiment

chapter 4|34 pages

Data analysis preparation

chapter 5|122 pages

Data analysis

chapter 6|26 pages

Presentation of results

chapter 7|18 pages

Pharmaceutical R&D

chapter 8|10 pages

Using R and Bioconductor

chapter 9|8 pages

Future perspectives